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Computer simulations of the diffusion of Na+ and Cl- ions across POPC lipid bilayer membranes

Salih, Rangeen and Matthai, Clarence 2017. Computer simulations of the diffusion of Na+ and Cl- ions across POPC lipid bilayer membranes. Journal of Chemical Physics 146 (10) , 105101-. 10.1063/1.4977703

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Abstract

We have carried out molecular dynamics simulations using NAMD to study the diffusivity of Na and Cl ions across a POPC lipid bilayer membrane. We show that an imbalance of positively and negatively charged ions on either side of the membrane leads to the diffusion of ions and water molecules. We considered the cases of both weak and very strong charge imbalance across the membrane. The diffusion coefficients of the ions have been determined from the mean square displacements of the particles as a function of time. We find that for strong electrochemical gradients, both the Na and Cl ions diffuse rapidly through pores in the membrane with diffusion coefficients up to ten times larger than in water. Rather surprisingly, we found that although the Na ions are the first to begin the permeation process due to the lower potential barrier that they experience compared to the Cl ions, the latter complete the permeation across the barrier more quickly due to their faster diffusion rates.

Item Type: Article
Date Type: Publication
Status: Published
Schools: Physics and Astronomy
Advanced Research Computing @ Cardiff (ARCCA)
Subjects: Q Science > QB Astronomy
Q Science > QC Physics
Publisher: American Institute of Physics (AIP)
ISSN: 0021-9606
Date of First Compliant Deposit: 9 June 2017
Date of Acceptance: 16 February 2017
Last Modified: 19 Oct 2019 03:33
URI: http://orca.cf.ac.uk/id/eprint/101321

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