Evolution of default genetic control mechanisms

Bains, William, Borriello, Enrico and Schulze-Makuch, Dirk 2021. Evolution of default genetic control mechanisms. PLoS ONE 16 (5) , e0251568. 10.1371/journal.pone.0251568

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Abstract

We present a model of the evolution of control systems in a genome under environmental constraints. The model conceptually follows the Jacob and Monod model of gene control. Genes contain control elements which respond to the internal state of the cell as well as the environment to control expression of a coding region. Control and coding regions evolve to maximize a fitness function between expressed coding sequences and the environment. The model was run 118 times to an average of 1.4∙106 ‘generations’ each with a range of starting parameters probed the conditions under which genomes evolved a ‘default style’ of control. Unexpectedly, the control logic that evolved was not significantly correlated to the complexity of the environment. Genetic logic was strongly correlated with genome complexity and with the fraction of genes active in the cell at any one time. More complex genomes correlated with the evolution of genetic controls in which genes were active (‘default on’), and a low fraction of genes being expressed correlated with a genetic logic in which genes were biased to being inactive unless positively activated (‘default off’ logic). We discuss how this might relate to the evolution of the complex eukaryotic genome, which operates in a ‘default off’ mode.

Item Type:	Article
Date Type:	Publication
Status:	Published
Schools:	Physics and Astronomy
Additional Information:	This is an open access article distributed under the terms of the Creative Commons Attribution License
Publisher:	Public Library of Science
ISSN:	1932-6203
Date of First Compliant Deposit:	27 July 2021
Date of Acceptance:	28 April 2021
Last Modified:	02 May 2023 11:30
URI:	https://orca.cardiff.ac.uk/id/eprint/142936

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