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Number of items: 31.

Pratt, Hillary G., Ma, Li, Dziadowicz, Sebastian A., Ott, Sascha, Whalley, Thomas, Szomolay, Barbara ORCID: https://orcid.org/0000-0002-5375-5533, Eubank, Timothy D., Hu, Gangqing and Boone, Brian A. 2024. Analysis of single nuclear chromatin accessibility reveals unique myeloid populations in human pancreatic ductal adenocarcinoma. Clinical and Translational Medicine 14 (3) , e1595. 10.1002/ctm2.1595
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Tripodi, Lorella, Feola, Sara, Granata, Ilaria, Whalley, Thomas, Passariello, Margherita, Capasso, Cristian, Coluccino, Ludovica, Vitale, Maria, Scalia, Giulia, Gentile, Laura, De Lorenzo, Claudia, Guarracino, Mario Rosario, Castaldo, Giuseppe, D?Argenio, Valeria, Szomolay, Barbara ORCID: https://orcid.org/0000-0002-5375-5533, Cerullo, Vincenzo and Pastore, Lucio 2023. Bifidobacterium affects antitumor efficacy of oncolytic adenovirus in a mouse model of melanoma. iScience 26 (10) , 107668. 10.1016/j.isci.2023.107668
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Dolton, Garry, Rius, Cristina, Wall, Aaron, Szomolay, Barbara ORCID: https://orcid.org/0000-0002-5375-5533, Bianchi, Valentina, Galloway, Sarah A.E., Hasan, MD Samiul, Morin, Theo, Caillaud, Marine, Thomas, Hannah L., Theaker, Sarah, Tan, Li Rong, Fuller, Anna, Topley, Katie, Legut, Mateusz, Attaf, Merriem, Hopkins, Jade R., Behiry, Enas, Zabkiewicz, Joanna ORCID: https://orcid.org/0000-0003-0951-3825, Alvares, Caroline ORCID: https://orcid.org/0000-0003-4391-9802, Lloyd, Angharad, Rogers, Amber, Henley, Peter, Fegan, Chris ORCID: https://orcid.org/0000-0001-9685-0621, Ottmann, Oliver ORCID: https://orcid.org/0000-0001-9559-1330, Man, Stephen ORCID: https://orcid.org/0000-0001-9103-1686, Crowther, Michael D., Donia, Marco, Svane, Inge Marie, Cole, David ORCID: https://orcid.org/0000-0003-0028-9396, Brown, Paul E., Rizkallah, Pierre ORCID: https://orcid.org/0000-0002-9290-0369 and Sewell, Andrew K. ORCID: https://orcid.org/0000-0003-3194-3135 2023. Targeting of multiple tumor-associated antigens by individual T cell receptors during successful cancer immunotherapy. Cell 186 (16) , pp. 3333-3349. 10.1016/j.cell.2023.06.020
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Millrine, David, Cardus Figueras, Ana, Uceda Fernandez, Javier, Andrews, Robert, Szomolay, Barbara ORCID: https://orcid.org/0000-0002-5375-5533, Cossins, Benjamin, Rice, Christopher M., Li, Jasmine, Tyrrell, Victoria, McLeod, Louise, Holmans, Peter ORCID: https://orcid.org/0000-0003-0870-9412, O'Donnell, Valerie ORCID: https://orcid.org/0000-0003-4089-8460, Taylor, Philip ORCID: https://orcid.org/0000-0003-0163-1421, Turner, Stephen J., Jenkins, Brendan J., Jones, Gareth, Topley, Nicholas, Williams, Nigel ORCID: https://orcid.org/0000-0003-1177-6931 and Jones, Simon ORCID: https://orcid.org/0000-0001-7297-9711 2023. Th1 cells alter the inflammatory signature of IL-6 by channeling STAT transcription factors to Alu-like retroelements. The Journal of Immunology 211 (2) , pp. 274-286. 10.4049/jimmunol.2300114
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Dewhurst, H., Boktor, J., Szomolay, B. ORCID: https://orcid.org/0000-0002-5375-5533 and Lewis, P. 2023. Patient-reported outcomes in 1,079 uncemented total hip arthroplasties: a prospective 10-year case series. Presented at: The Welsh Orthopaedic Society Meeting, Newport, Wales, 26-27 May 2023. Orthopaedic Proceedings. , vol.105-B (S4) British Editorial Society of Bone and Joint Surgery, p. 12. 10.1302/1358-992X.2023.4.012

Tripodi, Lorella, Sasso, Emanuele, Feola, Sara, Coluccino, Ludovica, Vitale, Maria, Leoni, Guido, Szomolay, Barbara ORCID: https://orcid.org/0000-0002-5375-5533, Pastore, Lucio and Cerullo, Vincenzo 2023. Systems biology approaches for the improvement of oncolytic virus-based immunotherapies. Cancers 15 (4) , 1297. 10.3390/cancers15041297
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Guest, Kerry, Whalley, Thomas, Maillard, Jean‐Yves ORCID: https://orcid.org/0000-0002-8617-9288, Artemiou, Andreas ORCID: https://orcid.org/0000-0002-7501-4090, Szomolay, Barbara ORCID: https://orcid.org/0000-0002-5375-5533 and Webber, Mark A. 2022. Responses of Salmonella biofilms to oxidizing biocides: evidence of spatial clustering. Environmental Microbiology 24 (12) , pp. 6426-6438. 10.1111/1462-2920.16263
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Martins dos Santos, Vitor, Anton, Mihail, Szomolay, Barbara ORCID: https://orcid.org/0000-0002-5375-5533, Ostaszewski, Marek, Arts, Ilja, Benfeitas, Rui, Dominguez Del Angel, Victoria, Ferk, Polonca, Fey, Dirk, Goble, Carole, Golebiewski, Martin, Gruden, Kristina, Heil, Katharina F., Hermjakob, Henning, Kahlem, Pascal, Klapa, Maria I., Koehorst, Jasper, Kolodkin, Alexey, Kutmon, Martina, Lesko?ek, Brane, Moretti, Sébastien, Müller, Wolfgang, Pagni, Marco, Rezen, Tadeja, Rocha, Miguel, Rozman, Damjana, ?afránek, David, Sheriff, Rahuman S. Malik, Suarez Diez, Maria, Van Steen, Kristel, Westerhoff, Hans V, Wittig, Ulrike, Wolstencroft, Katherine, Zupanic, Anze, Evelo, Chris T. and Hancock, John M. 2022. Systems Biology in ELIXIR: modelling in the spotlight. F1000Research 11 , 1265. 10.12688/f1000research.126734.1
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Dolton, Garry, Rius, Cristina, Hasan, Md Samiul, Wall, Aaron, Szomolay, Barbara ORCID: https://orcid.org/0000-0002-5375-5533, Behiry, Enas, Whalley, Thomas, Southgate, Joel, Fuller, Anna, Morin, Théo, Topley, Katie, Tan, Li Rong, Goulder, Philip J.R., Spiller, Owen B. ORCID: https://orcid.org/0000-0002-9117-6911, Rizkallah, Pierre J. ORCID: https://orcid.org/0000-0002-9290-0369, Jones, Lucy C. ORCID: https://orcid.org/0000-0002-3872-4376, Connor, Thomas R. ORCID: https://orcid.org/0000-0003-2394-6504 and Sewell, Andrew K. ORCID: https://orcid.org/0000-0003-3194-3135 2022. Emergence of immune escape at dominant SARS-CoV-2 killer T cell epitope. Cell 185 (16) , pp. 2936-2951. 10.1016/j.cell.2022.07.002
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Czarnewski, Paulo, Mahfouz, Ahmed, Calogero, Raffaele A., Palagi, Patricia M., Portell-Silva, Laura, Gonzalez-Uriarte, Asier, Soneson, Charlotte, Burdett, Tony, Szomolay, Barbara ORCID: https://orcid.org/0000-0002-5375-5533, Videm, Pavankumar, Hotz, Hans-Rudolf, Papatheodorou, Irene, Hancock, John M., Grüning, Björn, Haerty, Wilfried, Krause, Roland, Capella-Gutierrez, Salvador, Leskosek, Brane, Alessandri, Luca, Arigoni, Maddalena, Rezen, Tadeja, Botzki, Alexander, Ferk, Polonca, Lindvall, Jessica, Heil, Katharina F, Ishaque, Naveed and Korpelainen, Eija 2022. Community-driven ELIXIR activities in single-cell omics. F1000Research 11 , 869. 10.12688/f1000research.122312.1
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Chimbola, Obias M., Lungu, Edward M. and Szomolay, Barbara ORCID: https://orcid.org/0000-0002-5375-5533 2022. Optimal control application to a Kaposi’s sarcoma treatment model. International Journal of Biomathematics 15 (01) , 2150081. 10.1142/S1793524521500819

Pratt, Hillary G., Steinberger, Kayla J., Mihalik, Nicole E., Ott, Sascha, Whalley, Thomas, Szomolay, Barbara ORCID: https://orcid.org/0000-0002-5375-5533, Boone, Brian A. and Eubank, Timothy D. 2021. Macrophage and neutrophil interactions in the pancreatic tumor microenvironment drive the pathogenesis of pancreatic cancer. Cancers 14 (1) , 194. 10.3390/cancers14010194
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Lu, Yueh-An, Liao, Chia-Te, Raybould, Rachel, Talabani, Bnar, Grigorieva, Irina, Szomolay, Barbara ORCID: https://orcid.org/0000-0002-5375-5533, Bowen, Timothy ORCID: https://orcid.org/0000-0001-6050-0435, Andrews, Robert, Taylor, Philip R. ORCID: https://orcid.org/0000-0003-0163-1421 and Fraser, Donald ORCID: https://orcid.org/0000-0003-0102-9342 2021. Single-nucleus RNA sequencing identifies new classes of proximal tubular epithelial cells in kidney fibrosis. Journal of the American Society of Nephrology 32 (10) , pp. 2501-2516. 10.1681/ASN.2020081143
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Chiaro, Jacopo, Kasanen, Henna H.E., Whalley, Thomas, Capasso, Cristian, Grönholm, Mikaela, Feola, Sara, Peltonen, Karita, Hamdan, Firas, Hernberg, Micaela, Mäkelä, Siru, Karhapää, Hanna, Brown, Paul E., Martins, Beatriz, Fusciello, Manlio, Ylösmäki, Erkko O., Greco, Dario, Kreutzman, Anna S., Mustjoki, Satu, Szomolay, Barbara ORCID: https://orcid.org/0000-0002-5375-5533 and Cerullo, Vincenzo 2021. Viral molecular mimicry influences the antitumor immune response in murine and human melanoma. Cancer Immunology Research 9 (8) , pp. 981-983. 10.1158/2326-6066.CIR-20-0814
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Chimbola, Obias Mulenga, Lungu, Edward M. and Szomolay, Barbara ORCID: https://orcid.org/0000-0002-5375-5533 2021. Effect of innate and adaptive immune mechanisms on treatment regimens in an AIDS-related Kaposi's Sarcoma model. Journal of Biological Dynamics 15 (1) , pp. 213-249. 10.1080/17513758.2021.1912420
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Kaondera-Shava, R. F., Lungu, E. and Szomolay, B. ORCID: https://orcid.org/0000-0002-5375-5533 2021. A novel mathematical model of AIDS-associated Kaposi's sarcoma: Analysis and optimal control. BioSystems 200 , 104318. 10.1016/j.biosystems.2020.104318
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Crowther, Michael D., Dolton, Garry, Legut, Mateusz, Caillaud, Marine E., Lloyd, Angharad, Attaf, Meriem, Galloway, Sarah A. E., Rius, Cristina, Farrell, Colin P., Szomolay, Barbara ORCID: https://orcid.org/0000-0002-5375-5533, Ager, Ann ORCID: https://orcid.org/0000-0002-5763-8908, Parker, Alan L. ORCID: https://orcid.org/0000-0002-9302-1761, Fuller, Anna, Donia, Marco, McCluskey, James, Rossjohn, Jamie ORCID: https://orcid.org/0000-0002-2020-7522, Svane, Inge Marie, Phillips, John D. and Sewell, Andrew K. ORCID: https://orcid.org/0000-0003-3194-3135 2020. Genome-wide CRISPR-Cas9 screening reveals ubiquitous T cell cancer targeting via the monomorphic MHC class I-related protein MR1. Nature Immunology 21 , 178 - 185. 10.1038/s41590-019-0578-8
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Whalley, Thomas, Dolton, Garry, Brown, Paul E., Wall, Aaron, Wooldridge, Linda, van den Berg, Hugo, Fuller, Anna, Hopkins, Jade R., Crowther, Michael D., Attaf, Meriem, Knight, Robin R., Cole, David K. ORCID: https://orcid.org/0000-0003-0028-9396, Peakman, Mark, Sewell, Andrew K. ORCID: https://orcid.org/0000-0003-3194-3135 and Szomolay, Barbara ORCID: https://orcid.org/0000-0002-5375-5533 2020. GPU-accelerated discovery of pathogen-derived molecular mimics of a T-cell insulin epitope. Frontiers in Immunology 11 , 296. 10.3389/fimmu.2020.00296
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MacLachlan, Bruce J., Dolton, Garry, Papakyriakou, Athanasios, Greenshields-Watson, Alexander, Mason, Georgina H., Schauenburg, Andrea, Besneux, Matthieu, Szomolay, Barbara ORCID: https://orcid.org/0000-0002-5375-5533, Elliott, Tim, Sewell, Andrew K. ORCID: https://orcid.org/0000-0003-3194-3135, Gallimore, Awen ORCID: https://orcid.org/0000-0001-6675-7004, Rizkallah, Pierre ORCID: https://orcid.org/0000-0002-9290-0369, Cole, David K. ORCID: https://orcid.org/0000-0003-0028-9396 and Godkin, Andrew ORCID: https://orcid.org/0000-0002-1910-7567 2019. Human leukocyte antigen (HLA) class II peptide flanking residues tune the immunogenicity of a human tumor-derived epitope. Journal of Biological Chemistry 294 (52) , pp. 20246-20258. 10.1074/jbc.RA119.009437
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Twohig, Jason P., Cardus Figueras, Ana, Andrews, Robert, Wiede, Florian, Cossins, Benjamin C., Derrac Soria, Alicia, Lewis, Myles J., Townsend, Michael J., Millrine, David ORCID: https://orcid.org/0000-0002-8041-0151, Li, Jasmine, Hill, David G., Uceda Fernandez, Javier, Liu, Xiao, Szomolay, Barbara ORCID: https://orcid.org/0000-0002-5375-5533, Pepper, Christopher J., Taylor, Philip R. ORCID: https://orcid.org/0000-0003-0163-1421, Pitzalis, Costantino, Tiganis, Tony, Williams, Nigel M. ORCID: https://orcid.org/0000-0003-1177-6931, Jones, Gareth W. and Jones, Simon A. ORCID: https://orcid.org/0000-0001-7297-9711 2019. Activation of naïve CD4+ T cells re-tunes STAT1 signaling to deliver unique cytokine responses in memory CD4+ T cells. Nature Immunology 20 , pp. 458-470. 10.1038/s41590-019-0350-0
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Galloway, Sarah A. E., Dolton, Garry, Attaf, Meriem, Wall, Aaron, Fuller, Anna, Rius, Cristina, Bianchi, Valentina, Theaker, Sarah, Lloyd, Angharad, Caillaud, Marine E., Svane, Inge Marie, Donia, Marco, Cole, David K. ORCID: https://orcid.org/0000-0003-0028-9396, Szomolay, Barbara ORCID: https://orcid.org/0000-0002-5375-5533, Rizkallah, Pierre ORCID: https://orcid.org/0000-0002-9290-0369 and Sewell, Andrew K. ORCID: https://orcid.org/0000-0003-3194-3135 2019. Peptide super-agonist enhances T-cell responses to melanoma. Frontiers in Immunology 10 , 319. 10.3389/fimmu.2019.00319
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Tungatt, Katie, Dolton, Garry, Morgan, Sophie B., Attaf, Meriem, Fuller, Anna, Whalley, Thomas, Hemmink, Johanneke D., Porter, Emily, Szomolay, Barbara ORCID: https://orcid.org/0000-0002-5375-5533, Montoya, Maria, Hammond, John A., Miles, John J., Cole, David K. ORCID: https://orcid.org/0000-0003-0028-9396, Townsend, Alain, Bailey, Mick, Rizkallah, Pierre J. ORCID: https://orcid.org/0000-0002-9290-0369, Charleston, Bryan, Tchilian, Elma and Sewell, Andrew K. ORCID: https://orcid.org/0000-0003-3194-3135 2018. Induction of influenza-specific local CD8 T-cells in the respiratory tract after aerosol delivery of vaccine antigen or virus in the Babraham inbred pig. PLoS Pathogens 14 (5) , e1007017. 10.1371/journal.ppat.1007017
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Rius, Cristina, Attaf, Meriem, Tungatt, Katie, Bianchi, Valentina, Legut, Mateusz, Bovay, Amandine, Donia, Marco, Straten, Per thor, Peakman, Mark, Svane, Inge Marie, Ott, Sascha, Connor, Tom ORCID: https://orcid.org/0000-0003-2394-6504, Szomolay, Barbara ORCID: https://orcid.org/0000-0002-5375-5533, Dolton, Garry and Sewell, Andrew K. ORCID: https://orcid.org/0000-0003-3194-3135 2018. Peptide-MHC class 1 tetramers can fail to detect relevant functional T cell clonotypes and underestimate antigen-reactive T cell populations. Journal of Immunology 200 (7) , pp. 2263-2279. 10.4049/jimmunol.1700242
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Donia, Marco, Kjeldsen, Julie Westerlin, Andersen, Rikke, Wulff Westergaard, Marie Christine, Bianchi, Valentina, Legut, Mateusz, Attaf, Meriem, Szomolay, Barbara ORCID: https://orcid.org/0000-0002-5375-5533, Ott, Sascha, Dolton, Garry, Lyngaa, Rikke, Hadrup, Sine Reker, Sewell, Andrew K. ORCID: https://orcid.org/0000-0003-3194-3135 and Svane, Inge Marie 2017. PD-1+ polyfunctional T cells dominate the periphery after tumour-infiltrating lymphocyte therapy for cancer. Clinical Cancer Research 23 (19) , pp. 5779-5788. 10.1158/1078-0432.CCR-16-1692
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Szomolay, Barbara ORCID: https://orcid.org/0000-0002-5375-5533, Liu, Jie, Brown, Paul E., Miles, John J., Clement, Mathew ORCID: https://orcid.org/0000-0002-9280-5281, Llewellyn-Lacey, Sian, Dolton, Garry, Ekeruche-Makinde, Julia, Lissina, Anya, Schauenburg, Andrea J., Sewell, Andrew K. ORCID: https://orcid.org/0000-0003-3194-3135, Burrows, Scott R., Roederer, Mario, Price, David A. ORCID: https://orcid.org/0000-0001-9416-2737, Wooldridge, Linda and van den Berg, Hugo A. 2016. Identification of human viral protein-derived ligands recognized by individual MHCI-restricted T-cell receptors. Immunology and Cell Biology 94 (6) , pp. 573-582. 10.1038/icb.2016.12
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Cole, David K. ORCID: https://orcid.org/0000-0003-0028-9396, Bulek, Anna M., Dolton, Garry, Schauenberg, Andrea J., Szomolay, Barbara ORCID: https://orcid.org/0000-0002-5375-5533, Rittase, William, Trimby, Andrew, Jothikumar, Prithiviraj, Fuller, Anna, Skowera, Ania, Rossjohn, Jamie ORCID: https://orcid.org/0000-0002-2020-7522, Zhu, Cheng, Miles, John J., Peakman, Mark, Wooldridge, Linda, Rizkallah, Pierre J. ORCID: https://orcid.org/0000-0002-9290-0369 and Sewell, Andrew K. ORCID: https://orcid.org/0000-0003-3194-3135 2016. Hotspot autoimmune T cell receptor binding underlies pathogen and insulin peptide cross-reactivity. Journal of Clinical Investigation 126 (6) , pp. 2191-2204. 10.1172/JCI85679
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Szomolay, Barbara ORCID: https://orcid.org/0000-0002-5375-5533 and Cogan, N. G. 2015. Modelling mechanical and chemical treatment of biofilms with two phenotypic resistance mechanisms. Environmental Microbiology 17 (6) , pp. 1870-1883. 10.1111/1462-2920.12710

Szomolay, Barbara ORCID: https://orcid.org/0000-0002-5375-5533 and van den Berg, Hugo A. 2014. Modulation of T-cell receptor functional sensitivity via the opposing actions of protein tyrosine kinases and phosphatases: a mathematical model. Integrative Biology 6 (12) , pp. 1183-1195. 10.1039/C4IB00190G

Szomolay, Barbara ORCID: https://orcid.org/0000-0002-5375-5533, Dockree, Tamsin, Wooldridge, Linda and van den Berg, Hugo Antonius 2014. Corrigendum: co-Receptor CD8-mediated modulation of T-Cell receptor functional sensitivity and epitope recognition degeneracy. Frontiers in Immunology 5 , pp. 1-3. 10.3389/fimmu.2014.00443
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Szomolay, Barbara ORCID: https://orcid.org/0000-0002-5375-5533 and Lungu, Edward M. 2014. A mathematical model for the treatment of AIDS-related Kaposi's sarcoma. Journal of Biological Systems 22 (3) , pp. 495-522. 10.1142/S0218339014500247

Szomolay, Barbara ORCID: https://orcid.org/0000-0002-5375-5533, Dockree, Tamsin, Wooldridge, Linda and Van Den Berg, Hugo A 2013. Co-receptor CD8-mediated modulation of T-cell receptor functional sensitivity and epitope recognition degeneracy. Frontiers in Immunology 4 , pp. 1-11. 10.3389/fimmu.2013.00329
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This list was generated on Thu Mar 28 10:26:40 2024 GMT.